Sequence Similarity Clusters for the Entities in PDB 1GG2

Entity #1 | Chains: A
G PROTEIN GI ALPHA 1 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 6025
95 % 22 45 781 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 23 51 612
70 % 31 66 439
50 % 31 77 451
40 % 35 103 383
30 % 35 103 386
Entity #2 | Chains: B
G PROTEIN GI BETA 1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 39 1064
95 % 8 41 1214 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 8 41 1231
70 % 8 41 1260
50 % 9 42 1269
40 % 9 42 1262
30 % 9 42 1263
Entity #3 | Chains: G
G PROTEIN GI GAMMA 2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1543
95 % 2 31 1816 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 31 1856
70 % 2 31 1871
50 % 2 31 1908
40 % 2 31 1897
30 % 2 31 1816

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures