Sequence Similarity Clusters for the Entities in PDB 1GFW

Entity #1 | Chains: A
CASPASE-3 (APOPAIN, P20) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 39 817
95 % 37 40 969 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 37 40 993
70 % 37 40 1029
50 % 38 41 1043
40 % 43 48 807
30 % 43 48 811
Entity #2 | Chains: B
CASPASE-3 (APOPAIN, P10) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35677
95 % 49 53 637 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 52 56 608
70 % 52 56 652
50 % 71 80 420
40 % 71 81 441
30 % 84 97 327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures