Sequence Similarity Clusters for the Entities in PDB 1GFW

Entity #1 | Chains: A
CASPASE-3 (APOPAIN, P20) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 39 836
95 % 37 40 988 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 37 40 1010
70 % 37 40 1043
50 % 38 41 1064
40 % 43 48 817
30 % 43 48 824
Entity #2 | Chains: B
CASPASE-3 (APOPAIN, P10) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36389
95 % 49 53 648 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 52 56 615
70 % 52 56 660
50 % 71 80 426
40 % 71 81 450
30 % 84 97 337

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures