Sequence Similarity Clusters for the Entities in PDB 1GFW

Entity #1 | Chains: A
CASPASE-3 (APOPAIN, P20) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 39 869
95 % 37 40 1028 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 37 40 1053
70 % 37 40 1073
50 % 38 41 1089
40 % 43 48 840
30 % 43 48 839
Entity #2 | Chains: B
CASPASE-3 (APOPAIN, P10) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37067
95 % 49 53 676 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 52 56 651
70 % 52 56 694
50 % 71 80 434
40 % 71 81 459
30 % 84 97 362

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures