Sequence Similarity Clusters for the Entities in PDB 1GFP

Entity #1 | Chains: A
MATRIX PORIN OUTER MEMBRANE PROTEIN F protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56609
95 % 13 35 460 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 13 35 498
70 % 13 35 537
50 % 17 60 289
40 % 17 60 308
30 % 17 60 313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures