Sequence Similarity Clusters for the Entities in PDB 1GDT

Entity #1 | Chains: C
SITE I OF RES DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
SITE I OF RES DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
SITE I OF RES DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
PROTEIN (GAMMA DELTA RESOLVASE) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42662
95 % 1 4 7174 Flexibility: Medium
Max RMSD: 7.4, Avg RMSD: 3.2
PDBFlex
90 % 1 4 7139
70 % 1 6 4154
50 % 1 6 3994
40 % 1 6 3822
30 % 1 9 2593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures