Sequence Similarity Clusters for the Entities in PDB 1GDT

Entity #1 | Chains: C
SITE I OF RES DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
SITE I OF RES DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
SITE I OF RES DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
PROTEIN (GAMMA DELTA RESOLVASE) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37858
95 % 1 4 6276
90 % 1 4 6257
70 % 1 4 6111
50 % 1 4 5696
40 % 1 4 5335
30 % 1 7 3163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.