Sequence Similarity Clusters for the Entities in PDB 1GDN

Entity #1 | Chains: A
TRYPSIN protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3146
95 % 3 17 3888 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 17 3951
70 % 3 17 3892
50 % 3 17 3784
40 % 10 1864 4
30 % 10 1886 6
Entity #2 | Chains: B
GLY-ALA-LYS protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures