Sequence Similarity Clusters for the Entities in PDB 1GDL

Entity #1 | Chains: A
LEGHEMOGLOBIN (NITROGEN MONOXY) protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3505
95 % 3 17 3857 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 3 17 3920
70 % 3 17 3843
50 % 3 19 3011
40 % 3 27 1318
30 % 3 27 1310

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures