Sequence Similarity Clusters for the Entities in PDB 1GDD

Entity #1 | Chains: A
GI ALPHA 1 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 8093
95 % 16 45 738 Flexibility: Low
Max RMSD: 9.6, Avg RMSD: 1.6
PDBFlex
90 % 17 51 562
70 % 24 66 393
50 % 24 77 413
40 % 24 97 347
30 % 24 99 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.