Sequence Similarity Clusters for the Entities in PDB 1GDD

Entity #1 | Chains: A
GI ALPHA 1 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 8197
95 % 16 45 742 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 1.7
PDBFlex
90 % 17 51 575
70 % 24 66 398
50 % 24 77 418
40 % 24 97 355
30 % 24 99 345

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.