Sequence Similarity Clusters for the Entities in PDB 1GD8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
50S RIBOSOMAL PROTEIN L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 158 57
95 % 2 158 77 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 158 82
70 % 2 158 101
50 % 3 320 67
40 % 3 341 67
30 % 3 343 81

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.