Sequence Similarity Clusters for the Entities in PDB 1GD8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
50S RIBOSOMAL PROTEIN L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 176 62
95 % 2 176 81 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 176 84
70 % 2 176 102
50 % 3 373 46
40 % 3 380 58
30 % 3 382 75

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures