Sequence Similarity Clusters for the Entities in PDB 1GD8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
50S RIBOSOMAL PROTEIN L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 173 56
95 % 2 173 84 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 173 87
70 % 2 173 103
50 % 3 341 66
40 % 3 367 60
30 % 3 369 76

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures