Sequence Similarity Clusters for the Entities in PDB 1GD8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
50S RIBOSOMAL PROTEIN L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 160 60
95 % 2 160 86 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 160 91
70 % 2 160 109
50 % 3 326 69
40 % 3 351 70
30 % 3 353 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures