Sequence Similarity Clusters for the Entities in PDB 1GD2

Entity #1 | Chains: A,B,C,D
DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,F,G,H,I,J
TRANSCRIPTION FACTOR PAP1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14172
95 % 1 1 13434 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 3.6
PDBFlex
90 % 1 1 13218
70 % 1 1 12431
50 % 1 1 11085
40 % 1 1 10055
30 % 1 1 8763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.