Sequence Similarity Clusters for the Entities in PDB 1GD2

Entity #1 | Chains: A,B,C,D
DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,F,G,H,I,J
TRANSCRIPTION FACTOR PAP1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 13380
95 % 1 1 12697
90 % 1 1 12500
70 % 1 1 11747
50 % 1 1 10525
40 % 1 1 9545
30 % 1 1 8321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.