Sequence Similarity Clusters for the Entities in PDB 1GD2

Entity #1 | Chains: A,B,C,D
DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,F,G,H,I,J
TRANSCRIPTION FACTOR PAP1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14729
95 % 1 1 13923 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 3.6
PDBFlex
90 % 1 1 13696
70 % 1 1 12860
50 % 1 1 11465
40 % 1 1 10385
30 % 1 1 9049

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures