Sequence Similarity Clusters for the Entities in PDB 1GD1

Entity #1 | Chains: O,P,Q,R
HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4832
95 % 2 11 1183 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 2 11 1209
70 % 2 11 1238
50 % 11 139 72
40 % 11 139 92
30 % 11 139 103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures