Sequence Similarity Clusters for the Entities in PDB 1GD0

Entity #1 | Chains: A,B,C
MACROPHAGE MIGRATION INHIBITORY FACTOR protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 65 105
95 % 8 76 124 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.5
PDBFlex
90 % 8 76 127
70 % 9 80 140
50 % 9 81 161
40 % 9 82 173
30 % 12 100 136

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures