Sequence Similarity Clusters for the Entities in PDB 1GCW

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22775
95 % 2 2 19596
90 % 2 2 19065
70 % 3 3 11932
50 % 3 3 10638
40 % 340 747 7
30 % 732 1190 8
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN) protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22889
95 % 2 2 19680 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19144
70 % 2 2 17646
50 % 3 3 10655
40 % 3 3 9667
30 % 733 1190 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GCV 2 B, D HEMOGLOBIN BETA CHAIN 89020
2 1GCW 2 B, D PROTEIN (HEMOGLOBIN) BETA CHAIN 89020