Sequence Similarity Clusters for the Entities in PDB 1GCW

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23024
95 % 2 2 19793 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 19263
70 % 3 3 12053
50 % 3 3 10745
40 % 338 749 8
30 % 737 1200 8
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN) protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23137
95 % 2 2 19876 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19340
70 % 2 2 17831
50 % 3 3 10763
40 % 3 3 9762
30 % 738 1200 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GCV 2 B, D HEMOGLOBIN BETA CHAIN 89020
2 1GCW 2 B, D PROTEIN (HEMOGLOBIN) BETA CHAIN 89020