Sequence Similarity Clusters for the Entities in PDB 1GCW

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25226
95 % 2 2 22356 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 21647
70 % 3 3 13280
50 % 3 3 11775
40 % 348 764 7
30 % 793 1315 6
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN) protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22769
95 % 2 2 20409 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19503
70 % 2 2 17895
50 % 3 3 11050
40 % 3 3 9947
30 % 794 1315 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3MKB 2 B, D Hemoglobin subunit beta 57983
2 1GCV 2 B, D HEMOGLOBIN BETA CHAIN 89020
3 1GCW 2 B, D PROTEIN (HEMOGLOBIN) BETA CHAIN 89020