Sequence Similarity Clusters for the Entities in PDB 1GCW

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25809
95 % 2 2 22881 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 22138
70 % 3 3 13574
50 % 3 3 12011
40 % 352 770 7
30 % 799 1323 6
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN) protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23307
95 % 2 2 20887 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19946
70 % 2 2 18249
50 % 3 3 11286
40 % 3 3 10156
30 % 800 1323 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3MKB 1 A, C Hemoglobin subunit alpha 57983
2 1GCV 1 A, C HEMOGLOBIN ALPHA CHAIN 89020
3 1GCW 1 A, C PROTEIN (HEMOGLOBIN) ALPHA CHAIN 89020