Sequence Similarity Clusters for the Entities in PDB 1GCW

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN) protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26311
95 % 2 2 23311 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 22554
70 % 3 3 13852
50 % 3 3 12261
40 % 352 774 8
30 % 803 1331 7
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN) protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23748
95 % 2 2 21275 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 20329
70 % 2 2 18582
50 % 3 3 11515
40 % 3 3 10358
30 % 804 1331 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3MKB 1 A, C Hemoglobin subunit alpha 57983
2 1GCV 1 A, C HEMOGLOBIN ALPHA CHAIN 89020
3 1GCW 1 A, C PROTEIN (HEMOGLOBIN) ALPHA CHAIN 89020