Sequence Similarity Clusters for the Entities in PDB 1GCV

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22775
95 % 1 2 19596 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 19065
70 % 2 3 11932
50 % 2 3 10638
40 % 279 747 7
30 % 651 1190 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22889
95 % 1 2 19680 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19144
70 % 1 2 17646
50 % 2 3 10655
40 % 2 3 9667
30 % 652 1190 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.