Sequence Similarity Clusters for the Entities in PDB 1GCV

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24472
95 % 1 2 21686
90 % 1 2 21030
70 % 2 3 12905
50 % 2 3 11461
40 % 283 759 7
30 % 694 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22068
95 % 1 2 19782 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18945
70 % 1 2 17417
50 % 2 3 10764
40 % 2 3 9696
30 % 695 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures