Sequence Similarity Clusters for the Entities in PDB 1GCV

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23062
95 % 1 2 19827
90 % 1 2 19291
70 % 2 3 12066
50 % 2 3 10757
40 % 279 749 8
30 % 658 1201 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23175
95 % 1 2 19910 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19368
70 % 1 2 17857
50 % 2 3 10775
40 % 2 3 9772
30 % 659 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures