Sequence Similarity Clusters for the Entities in PDB 1GCV

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22419
95 % 1 2 19265 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18745
70 % 2 3 11718
50 % 2 3 10455
40 % 277 739 9
30 % 649 1182 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22528
95 % 1 2 19346 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18821
70 % 1 2 17394
50 % 2 3 10473
40 % 2 3 9500
30 % 650 1182 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.