Sequence Similarity Clusters for the Entities in PDB 1GCQ

Entity #1 | Chains: A,B
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14557
95 % 4 7 10193 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 7 10066
70 % 4 7 9559
50 % 5 14 3632
40 % 82 286 125
30 % 195 1046 9
Entity #2 | Chains: C
VAV PROTO-ONCOGENE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16509
95 % 1 2 15416 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 2 15139
70 % 1 2 14193
50 % 1 2 12584
40 % 1 2 11393
30 % 1 2 9900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures