Sequence Similarity Clusters for the Entities in PDB 1GCQ

Entity #1 | Chains: A,B
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14782
95 % 4 7 10341 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 7 10211
70 % 4 7 9690
50 % 5 14 3677
40 % 83 287 126
30 % 200 1062 9
Entity #2 | Chains: C
VAV PROTO-ONCOGENE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16762
95 % 1 2 15618 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 2 15333
70 % 1 2 14368
50 % 1 2 12732
40 % 1 2 11519
30 % 1 2 10012

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures