Sequence Similarity Clusters for the Entities in PDB 1GCQ

Entity #1 | Chains: A,B
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14421
95 % 4 7 8994 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 7 8904
70 % 4 7 8565
50 % 8 19 2449
40 % 90 318 110
30 % 108 401 70
Entity #2 | Chains: C
VAV PROTO-ONCOGENE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16917
95 % 1 2 14384 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 2 14114
70 % 1 2 14371
50 % 1 2 12690
40 % 1 2 11384
30 % 1 2 9667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures