Sequence Similarity Clusters for the Entities in PDB 1GCC

Entity #1 | Chains: B
DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*GP*CP*TP*GP*GP*CP*GP*GP*CP*TP*A)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25782
95 % 1 3 21412
90 % 1 3 20754
70 % 1 3 19004
50 % 1 3 16575
40 % 1 3 14810
30 % 1 3 12718

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.