Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50821
95 % 12 15 3688
90 % 12 15 3726
70 % 65 125 168
50 % 65 125 201
40 % 65 125 221
30 % 65 128 228
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 35 694
95 % 18 40 827
90 % 18 40 860
70 % 18 40 901
50 % 18 40 942
40 % 18 40 963
30 % 18 40 949
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55930
95 % 14 24 1406
90 % 321 613 3
70 % 897 1704 2
50 % 2194 4154 1
40 % 2194 4155 1
30 % 2494 4901 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54622
95 % 14 24 1404
90 % 14 24 1429
70 % 1067 2010 1
50 % 2195 4154 1
40 % 2195 4155 1
30 % 2495 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.