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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41288
95% 12 15 2816
90% 12 15 2862
70% 15 27 1154
50% 15 27 1216
40% 15 27 1250
30% 15 29 1149
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 27 953
95% 18 32 1027
90% 18 32 1049
70% 18 32 1080
50% 18 32 1145
40% 18 32 1178
30% 18 32 1163
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45523
95% 14 20 1577
90% 186 360 4
70% 682 1274 3
50% 1631 3031 1
40% 1632 3032 1
30% 1841 3590 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44457
95% 14 20 1573
90% 14 20 1621
70% 793 1461 2
50% 1632 3031 1
40% 1633 3032 1
30% 1842 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.