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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42952
95% 12 15 3010
90% 12 15 3050
70% 15 29 1075
50% 15 29 1140
40% 15 29 1161
30% 15 31 1061
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 30 835
95% 18 35 936
90% 18 35 956
70% 18 35 991
50% 18 35 1037
40% 18 35 1062
30% 18 35 1040
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47342
95% 14 21 1655
90% 192 377 5
70% 710 1332 3
50% 1694 3170 1
40% 1695 3171 1
30% 1913 3753 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46249
95% 14 21 1653
90% 14 21 1698
70% 823 1528 2
50% 1695 3170 1
40% 1696 3171 1
30% 1914 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.