POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43322
95% 12 15 3051
90% 12 15 3089
70% 15 29 1085
50% 15 29 1145
40% 15 29 1170
30% 15 31 1068
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 30 843
95% 18 35 947
90% 18 35 965
70% 18 35 998
50% 18 35 1043
40% 18 35 1069
30% 18 35 1048
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47750
95% 14 21 1668
90% 194 380 5
70% 713 1339 3
50% 1704 3188 1
40% 1705 3189 1
30% 1923 3771 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46653
95% 14 21 1666
90% 14 21 1713
70% 828 1537 2
50% 1705 3188 1
40% 1706 3189 1
30% 1924 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.