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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42617
95% 12 15 2977
90% 12 15 3014
70% 15 28 1097
50% 15 28 1169
40% 15 28 1188
30% 15 30 1107
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 29 857
95% 18 34 960
90% 18 34 978
70% 18 34 1007
50% 18 34 1057
40% 18 34 1086
30% 18 34 1063
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46993
95% 14 20 1698
90% 192 374 5
70% 706 1320 3
50% 1686 3142 1
40% 1687 3143 1
30% 1903 3719 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45901
95% 14 20 1694
90% 14 20 1741
70% 819 1514 2
50% 1687 3142 1
40% 1688 3143 1
30% 1904 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.