Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49191
95 % 12 15 3536
90 % 12 15 3573
70 % 64 121 166
50 % 64 121 198
40 % 64 121 214
30 % 64 124 223
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 727
95 % 18 39 841
90 % 18 39 875
70 % 18 39 917
50 % 18 39 961
40 % 18 39 980
30 % 18 39 974
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54132
95 % 14 23 1491
90 % 252 503 3
70 % 844 1617 3
50 % 2064 3934 1
40 % 2065 3935 1
30 % 2358 4663 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52866
95 % 14 23 1487
90 % 14 23 1518
70 % 1008 1909 1
50 % 2065 3934 1
40 % 2066 3935 1
30 % 2359 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.