Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47242
95 % 12 15 3385
90 % 12 15 3424
70 % 15 31 1013
50 % 15 31 1063
40 % 15 31 1088
30 % 61 111 242
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 685
95 % 18 39 759
90 % 18 39 798
70 % 18 39 845
50 % 18 39 909
40 % 18 39 933
30 % 18 39 927
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52010
95 % 14 23 1437
90 % 234 461 4
70 % 797 1526 3
50 % 1948 3692 1
40 % 1949 3693 1
30 % 2195 4355 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50799
95 % 14 23 1432
90 % 14 23 1458
70 % 951 1790 1
50 % 1949 3692 1
40 % 1950 3693 1
30 % 2196 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.