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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41993
95% 12 15 2920
90% 12 15 2963
70% 15 28 1079
50% 15 28 1151
40% 15 28 1167
30% 15 30 1088
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 29 847
95% 18 34 948
90% 18 34 969
70% 18 34 995
50% 18 34 1048
40% 18 34 1074
30% 18 34 1051
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46297
95% 14 20 1676
90% 190 368 5
70% 697 1297 3
50% 1666 3090 1
40% 1667 3091 1
30% 1878 3654 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45212
95% 14 20 1672
90% 14 20 1719
70% 810 1490 2
50% 1667 3090 1
40% 1668 3091 1
30% 1879 3654 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.