Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54640
95 % 12 15 3973
90 % 12 15 4010
70 % 66 126 178
50 % 66 126 221
40 % 66 126 240
30 % 66 129 248
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 38 699
95 % 18 43 833
90 % 18 43 863
70 % 18 43 895
50 % 18 43 941
40 % 18 43 968
30 % 18 43 940
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21024
95 % 16 32 1110
90 % 360 697 3
70 % 1174 2280 1
50 % 2401 4619 1
40 % 2401 4619 1
30 % 2747 5440 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58623
95 % 14 25 1390
90 % 14 25 1413
70 % 1168 2238 2
50 % 2402 4619 1
40 % 2402 4619 1
30 % 2748 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.