Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51912
95 % 12 15 3772
90 % 12 15 3805
70 % 65 125 172
50 % 65 125 211
40 % 65 125 234
30 % 65 128 239
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 35 717
95 % 18 40 859
90 % 18 40 891
70 % 18 40 922
50 % 18 40 966
40 % 18 40 989
30 % 18 40 971
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57091
95 % 14 24 1442
90 % 328 632 3
70 % 918 1752 2
50 % 2248 4272 1
40 % 2248 4272 1
30 % 2563 5038 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55757
95 % 14 24 1440
90 % 14 24 1466
70 % 1093 2066 1
50 % 2249 4272 1
40 % 2249 4272 1
30 % 2564 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.