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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41495
95% 12 15 2825
90% 12 15 2873
70% 15 27 1155
50% 15 27 1218
40% 15 27 1253
30% 15 29 1153
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 28 921
95% 18 33 979
90% 18 33 1003
70% 18 33 1034
50% 18 33 1102
40% 18 33 1131
30% 18 33 1120
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45751
95% 14 20 1583
90% 188 365 4
70% 694 1291 3
50% 1660 3070 1
40% 1661 3071 1
30% 1870 3629 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44675
95% 14 20 1579
90% 14 20 1627
70% 807 1480 2
50% 1661 3070 1
40% 1662 3071 1
30% 1871 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.