Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49995
95 % 12 15 3592
90 % 12 15 3633
70 % 64 122 167
50 % 64 122 198
40 % 64 122 214
30 % 64 125 226
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 734
95 % 18 39 855
90 % 18 39 889
70 % 18 39 930
50 % 18 39 979
40 % 18 39 994
30 % 18 39 986
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55015
95 % 14 23 1532
90 % 304 585 3
70 % 861 1648 3
50 % 2109 4012 1
40 % 2110 4014 1
30 % 2408 4750 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53730
95 % 14 23 1528
90 % 14 23 1564
70 % 1028 1945 1
50 % 2110 4012 1
40 % 2111 4014 1
30 % 2409 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.