Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48856
95 % 12 15 3515
90 % 12 15 3552
70 % 64 120 166
50 % 64 120 196
40 % 64 120 213
30 % 64 123 222
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 723
95 % 18 39 831
90 % 18 39 865
70 % 18 39 906
50 % 18 39 950
40 % 18 39 972
30 % 18 39 967
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53751
95 % 14 23 1483
90 % 252 500 4
70 % 843 1609 3
50 % 2057 3902 1
40 % 2058 3903 1
30 % 2351 4631 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52491
95 % 14 23 1479
90 % 14 23 1510
70 % 1005 1894 1
50 % 2058 3902 1
40 % 2059 3903 1
30 % 2352 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.