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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44227
95% 12 15 3107
90% 12 15 3146
70% 15 29 1108
50% 15 29 1165
40% 15 29 1191
30% 15 31 1087
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 30 862
95% 18 35 977
90% 18 35 997
70% 18 35 1025
50% 18 35 1064
40% 18 35 1090
30% 18 35 1067
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48717
95% 14 21 1703
90% 212 413 4
70% 728 1388 3
50% 1743 3295 1
40% 1744 3296 1
30% 1964 3893 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47606
95% 14 21 1701
90% 14 21 1748
70% 847 1590 2
50% 1744 3295 1
40% 1745 3296 1
30% 1965 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.