Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52677
95 % 12 15 3824
90 % 12 15 3859
70 % 66 126 179
50 % 66 126 216
40 % 66 126 238
30 % 66 129 241
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 35 744
95 % 18 40 897
90 % 18 40 928
70 % 18 40 954
50 % 18 40 988
40 % 18 40 1006
30 % 18 40 981
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57935
95 % 14 24 1473
90 % 334 644 3
70 % 929 1775 2
50 % 2301 4367 1
40 % 2301 4367 1
30 % 2628 5151 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56571
95 % 14 24 1471
90 % 14 24 1494
70 % 1118 2111 1
50 % 2302 4367 1
40 % 2302 4367 1
30 % 2629 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.