Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49605
95 % 12 15 3563
90 % 12 15 3600
70 % 64 121 167
50 % 64 121 199
40 % 64 121 217
30 % 64 124 223
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 730
95 % 18 39 848
90 % 18 39 883
70 % 18 39 924
50 % 18 39 972
40 % 18 39 987
30 % 18 39 982
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54589
95 % 14 23 1515
90 % 257 518 3
70 % 855 1639 3
50 % 2090 3985 1
40 % 2091 3986 1
30 % 2385 4715 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53312
95 % 14 23 1511
90 % 14 23 1543
70 % 1019 1932 1
50 % 2091 3985 1
40 % 2092 3986 1
30 % 2386 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.