Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49291
95 % 12 15 3545
90 % 12 15 3582
70 % 64 121 166
50 % 64 121 198
40 % 64 121 214
30 % 64 124 223
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 727
95 % 18 39 843
90 % 18 39 877
70 % 18 39 918
50 % 18 39 961
40 % 18 39 981
30 % 18 39 976
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54240
95 % 14 23 1496
90 % 253 505 3
70 % 846 1620 3
50 % 2068 3940 1
40 % 2069 3941 1
30 % 2362 4669 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52973
95 % 14 23 1492
90 % 14 23 1523
70 % 1010 1912 1
50 % 2069 3940 1
40 % 2070 3941 1
30 % 2363 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.