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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41917
95% 12 15 2918
90% 12 15 2961
70% 15 28 1051
50% 15 28 1138
40% 15 28 1159
30% 15 30 1080
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 29 816
95% 18 34 893
90% 18 34 915
70% 18 34 954
50% 18 34 1033
40% 18 34 1066
30% 18 34 1043
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46218
95% 14 20 1669
90% 190 368 4
70% 697 1297 3
50% 1666 3090 1
40% 1667 3091 1
30% 1878 3653 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45134
95% 14 20 1665
90% 14 20 1711
70% 810 1490 2
50% 1667 3090 1
40% 1668 3091 1
30% 1879 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.