Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27701
95 % 12 15 4497 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 12 15 4538
70 % 68 189 130
50 % 68 189 158
40 % 68 189 168
30 % 68 192 182
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 850
95 % 18 45 812 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 18 45 842
70 % 18 45 886
50 % 18 45 938
40 % 18 45 964
30 % 18 45 948
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63683
95 % 16 34 1095 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.2
PDBFlex
90 % 438 832 2
70 % 1382 2670 1
50 % 2833 5421 1
40 % 3234 6121 1
30 % 3950 7588 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 26 1187
95 % 14 26 1406 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 14 26 1433
70 % 1375 2629 2
50 % 2834 5421 1
40 % 3235 6121 1
30 % 3951 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures