Sequence Similarity Clusters for the Entities in PDB 1GC1

Entity #1 | Chains: G
ENVELOPE PROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48585
95 % 12 15 3489
90 % 12 15 3526
70 % 64 120 165
50 % 64 120 196
40 % 64 120 212
30 % 64 123 222
Entity #2 | Chains: C
CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 34 715
95 % 18 39 812
90 % 18 39 851
70 % 18 39 900
50 % 18 39 947
40 % 18 39 968
30 % 18 39 962
Entity #3 | Chains: L
ANTIBODY 17B protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53460
95 % 14 23 1474
90 % 243 482 4
70 % 827 1583 3
50 % 2023 3846 1
40 % 2024 3847 1
30 % 2317 4574 1
Entity #4 | Chains: H
ANTIBODY 17B protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52206
95 % 14 23 1470
90 % 14 23 1499
70 % 988 1866 1
50 % 2024 3846 1
40 % 2025 3847 1
30 % 2318 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.