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HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
Sequence Clustering and Redundancy Reduction Results
1GC1
Sequence Clusters for the Sequence Entities in PDB 1GC1
Entity #1: Chains: G - ENVELOPE PROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41648
95% 12 15 2838
90% 12 15 2886
70% 15 27 1157
50% 15 27 1221
40% 15 27 1256
30% 15 29 1158
Entity #2: Chains: C - CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 28 925
95% 18 33 985
90% 18 33 1009
70% 18 33 1041
50% 18 33 1110
40% 18 33 1137
30% 18 33 1124
Entity #3: Chains: L - ANTIBODY 17B protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45913
95% 14 20 1588
90% 188 366 4
70% 694 1292 3
50% 1660 3072 1
40% 1661 3073 1
30% 1872 3633 1
Entity #4: Chains: H - ANTIBODY 17B protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44836
95% 14 20 1584
90% 14 20 1632
70% 807 1481 2
50% 1661 3072 1
40% 1662 3073 1
30% 1873 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.