Sequence Similarity Clusters for the Entities in PDB 1GBV

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 83 209 26
95 % 95 240 34 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 96 241 35
70 % 116 322 18
50 % 280 732 5
40 % 284 737 9
30 % 659 1177 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43041
95 % 102 240 33 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 105 245 31
70 % 129 336 14
50 % 281 732 5
40 % 285 737 9
30 % 660 1177 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.