Sequence Similarity Clusters for the Entities in PDB 1GBU

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 209 26
95 % 37 240 34 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 38 241 35
70 % 48 322 18
50 % 119 732 5
40 % 120 737 9
30 % 355 1177 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43040
95 % 37 240 33 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 38 245 31
70 % 49 336 14
50 % 120 732 5
40 % 121 737 9
30 % 356 1177 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.