Sequence Similarity Clusters for the Entities in PDB 1GBU

Entity #1 | Chains: A,C
HEMOGLOBIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 214 22
95 % 37 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 38 246 21
70 % 48 327 15
50 % 119 744 4
40 % 120 749 8
30 % 359 1198 8
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44214
95 % 37 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 38 250 19
70 % 49 341 12
50 % 120 744 4
40 % 121 749 8
30 % 360 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.