Sequence Similarity Clusters for the Entities in PDB 1GBM

Entity #1 | Chains: A
ALPHA-LYTIC PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 7009
95 % 44 48 1032 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 44 48 1062
70 % 46 50 958
50 % 85 89 530
40 % 85 89 573
30 % 85 89 577
Entity #2 | Chains: P
METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H5C 1 A ALPHA-LYTIC PROTEASE MATURE PROTEASE DOMAIN (RESIDUES 200-397) 69 3.4.21.12 | Details
2 1SSX 1 A Alpha-lytic protease Mature protease domain (residues 200-397) 69 3.4.21.12 | Details
3 2H5D 1 A ALPHA-LYTIC PROTEASE glycerol bound to the catalytic adduct, creating a mimic of the acylation transition state intermediate MATURE PROTEASE DOMAIN (RESIDUES 200-397) 69 3.4.21.12 | Details
4 3M7U 1 A Alpha-lytic protease MATURE PROTEASE DOMAIN (RESIDUES 1-198) 69 3.4.21.12 | Details
5 3URD 1 A Alpha-lytic protease UNP residues 200-397 69 3.4.21.12 | Details
6 3URC 1 A Alpha-lytic protease 69 3.4.21.12 | Details
7 2QA9 1 E Streptogrisin-B 1911 3.4.21.81 | Details
8 2QAA 1 A, B Streptogrisin-B 1911 3.4.21.81 | Details
9 1QQ4 1 A ALPHA-LYTIC PROTEASE RESIDUES 1-198 69 3.4.21.12 | Details
10 1QRW 1 A ALHPA-LYTIC PROTEASE MATURE PROTEASE DOMAIN, RESIDUES 1-198 69 3.4.21.12 | Details
11 3QGJ 1 A, C Alpha-lytic protease residues 200-397 69 3.4.21.12 | Details
12 5MRR 1 A, B, C, D Lytic endopeptidase preproenzyme 186334
13 1SGP 1 E STREPTOMYCES GRISEUS PROTEINASE B 1911 3.4.21.81 | Details
14 2SGA 1 A PROTEINASE A 1911 3.4.21.80 | Details
15 3URE 1 A, B Alpha-lytic protease 69 3.4.21.12 | Details
16 3M7T 1 A Alpha-lytic protease MATURE PROTEASE DOMAIN (RESIDUES 1-198) 69 3.4.21.12 | Details
17 2ULL 1 A ALPHA-LYTIC PROTEASE THE ELECTRON DENSITY WAS MODELED WITH 16 CONFORMATIONS OF THE ENTIRE PROTEIN 69 3.4.21.12 | Details
18 1TAL 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
19 2PFE 1 A, B Alkaline serine protease residues 183-368 2021
20 1HPG 1 A Glutamic acid specific protease 1911 2.5.1.16 | Details
21 1QRX 1 A ALPHA-LYTIC PROTEASE MATURE PROTEASE DOMAIN, RESIDUES 1-198 69 3.4.21.12 | Details
22 2ALP 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
23 5MRT 1 A, B Lytic endopeptidase preproenzyme 186334
24 1CT4 1 E PROTEINASE B 1911 3.4.21.81 | Details
25 2SFA 1 A SERINE PROTEINASE 1906 3.4.21 | Details
26 4SGA 1 E PROTEINASE A (SGPA) 1911 3.4.21.80 | Details
27 5SGA 1 E PROTEINASE A (SGPA) 1911 3.4.21.80 | Details
28 2NU2 1 E Streptogrisin B, Protease B residues 115-299 1911 3.4.21.81 | Details
29 1CT2 1 E PROTEINASE B 1911 3.4.21.81 | Details
30 3SGA 1 E PROTEINASE A (SGPA) 1911 3.4.21.80 | Details
31 2SGF 1 E Streptogrisin B 1911 3.4.21.81 | Details
32 1SGC 1 A PROTEINASE A 1911 3.4.21.80 | Details
33 3SGB 1 E PROTEINASE B (SGPB) 1911 3.4.21.81 | Details
34 1SGR 1 E STREPTOMYCES GRISEUS PROTEINASE B 1911 3.4.21.81 | Details
35 2NU3 1 E Streptogrisin B, Proteinase B residues 115-299 1911 3.4.21.81 | Details
36 2SGQ 1 E Streptogrisin B 1911 3.4.21.81 | Details
37 1DS2 1 E PROTEINASE B (SGPB) 1911 3.4.21.81 | Details
38 1SGE 1 E Streptogrisin B 1911 3.4.21.81 | Details
39 1P12 1 E ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
40 2NU4 1 E Streptogrisin B, Proteinase B residues 115-299 1911 3.4.21.81 | Details
41 1SGD 1 E Streptogrisin B 1911 3.4.21.81 | Details
42 1SGN 1 E Streptogrisin B 1911 3.4.21.81 | Details
43 1SGY 1 E Streptogrisin B 1911 3.4.21.81 | Details
44 1SGQ 1 E STREPTOMYCES GRISEUS PROTEINASE B 1911 3.4.21.81 | Details
45 2EA3 1 A Chymotrypsin 301388 3.4.21 | Details
46 2NU1 1 E Streptogrisin B residues 115-299 1911 3.4.21.81 | Details
47 1P11 1 E ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
48 1CT0 1 E PROTEINASE B 1911 3.4.21.81 | Details
49 3SGQ 1 E Streptogrisin B 1911 3.4.21.81 | Details
50 2GKV 1 E Streptogrisin B 1911 3.4.21.81 | Details
51 2NU0 1 E Streptogrisin B, Protease B residues 115-299 1911 3.4.21.81 | Details
52 2OUA 1 A, B Serine protease 53437
53 2SGP 1 E PROTEINASE B 1911 3.4.21.81 | Details
54 1P01 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
55 2SGD 1 E Streptogrisin B 1911 3.4.21.81 | Details
56 1GBJ 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
57 2SGE 1 E Streptogrisin B 1911 3.4.21.81 | Details
58 1P02 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
59 7LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
60 3PRO 1 A, B ALPHA-LYTIC PROTEASE MATURE PROTEASE 69 3.4.21.12 | Details
61 6LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
62 1P05 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
63 1GBK 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
64 5LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
65 4SGB 1 E SERINE PROTEINASE B 1911 3.4.21.81 | Details
66 1CSO 1 E PROTEINASE B 1911 3.4.21.81 | Details
67 1GBA 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
68 3LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
69 9LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
70 1GBF 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
71 5MRS 1 A, B, C, D Lytic endopeptidase preproenzyme 186334
72 1GBB 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
73 1P03 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
74 1GBL 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
75 1P09 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
76 2LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
77 1BOQ 1 A PROTEIN (ALPHA-LYTIC PROTEASE) 69 3.4.21.12 | Details
78 1GBC 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
79 8LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
80 1GBD 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
81 1GBH 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
82 1P10 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
83 1GBI 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
84 1GBE 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
85 1GBM 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
86 1P06 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
87 1P04 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
88 4PRO 1 A, B ALPHA-LYTIC PROTEASE CHAIN A, B, MATURE PROTEASE. CHAIN C, D, PRO REGION 69 3.4.21.12 | Details
89 5WOT 1 A Alpha-lytic protease residues 200-397 69 3.4.21.12 | Details