Sequence Similarity Clusters for the Entities in PDB 1GBM

Entity #1 | Chains: A
ALPHA-LYTIC PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 7332
95 % 44 48 1096 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 44 48 1128
70 % 46 50 997
50 % 85 89 548
40 % 85 89 592
30 % 85 89 594
Entity #2 | Chains: P
METHOXYSUCCINYL-ALA-ALA-PRO-PHENYLALANINE BORONIC ACID INHIBITOR protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1GBJ 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
2 1GBK 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
3 1GBA 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
4 3LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
5 1GBB 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
6 1GBL 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
7 2LPR 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
8 1GBC 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
9 1GBD 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details
10 1GBM 1 A ALPHA-LYTIC PROTEASE 69 3.4.21.12 | Details