Sequence Similarity Clusters for the Entities in PDB 1GAX

Entity #1 | Chains: C,D
TRNA(VAL) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
VALYL-TRNA SYNTHETASE protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14351
95 % 1 3 13471 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 13240
70 % 1 3 11132
50 % 1 3 9972
40 % 1 3 9009
30 % 1 3 7760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures