Sequence Similarity Clusters for the Entities in PDB 1GAX

Entity #1 | Chains: C,D
TRNA(VAL) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
VALYL-TRNA SYNTHETASE protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11408
95 % 1 3 11360 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 11213
70 % 1 3 10627
50 % 1 3 9616
40 % 1 3 8803
30 % 1 3 7746

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures