Sequence Similarity Clusters for the Entities in PDB 1GAX

Entity #1 | Chains: C,D
TRNA(VAL) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
VALYL-TRNA SYNTHETASE protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11232
95 % 1 3 11191 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 3.7
PDBFlex
90 % 1 3 11045
70 % 1 3 10476
50 % 1 3 9486
40 % 1 3 8688
30 % 1 3 7650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures