Sequence Similarity Clusters for the Entities in PDB 1GAT

Entity #1 | Chains: B
DNA (5'-D(P*AP*GP*AP*TP*AP*AP*AP*C)3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(P*GP*TP*TP*TP*AP*TP*CP*T)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ERYTHROID TRANSCRIPTION FACTOR GATA-1 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 23866
95 % 3 4 20354
90 % 3 4 19792
70 % 6 7 7580
50 % 6 7 6986
40 % 6 7 6499
30 % 6 7 5794

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.