Sequence Similarity Clusters for the Entities in PDB 1GAQ

Entity #1 | Chains: A,C
FERREDOXIN-NADP+ REDUCTASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19163
95 % 2 4 6838 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 2 4 6823
70 % 17 22 1403
50 % 63 69 585
40 % 63 69 621
30 % 64 71 565
Entity #2 | Chains: B
FERREDOXIN I protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 14011
95 % 4 6 6122 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 4 6 6117
70 % 33 45 715
50 % 38 50 694
40 % 38 50 720
30 % 38 51 695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.