Sequence Similarity Clusters for the Entities in PDB 1GAQ

Entity #1 | Chains: A,C
FERREDOXIN-NADP+ REDUCTASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7419
95 % 2 4 7505 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 2 4 7458
70 % 17 22 1469
50 % 63 69 610
40 % 63 69 646
30 % 67 76 494
Entity #2 | Chains: B
FERREDOXIN I protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5659
95 % 4 6 5909 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 4 6 5918
70 % 33 46 676
50 % 38 51 640
40 % 38 51 677
30 % 38 52 670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures