Sequence Similarity Clusters for the Entities in PDB 1GAQ

Entity #1 | Chains: A,C
FERREDOXIN-NADP+ REDUCTASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19651
95 % 2 4 6992 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 2 4 6978
70 % 17 22 1436
50 % 63 69 597
40 % 63 69 634
30 % 64 71 575
Entity #2 | Chains: B
FERREDOXIN I protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 14339
95 % 4 6 6249 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 4 6 6246
70 % 33 45 724
50 % 38 50 705
40 % 38 50 735
30 % 38 51 714

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures