Sequence Similarity Clusters for the Entities in PDB 1GAF

Entity #1 | Chains: L
CHIMERIC 48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39912
95 % 6 9 7615 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 196 693 3
70 % 665 2264 1
50 % 1366 4587 1
40 % 1366 4587 1
30 % 1530 5392 1
Entity #2 | Chains: H
CHIMERIC 48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39636
95 % 1 4 17962 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.0
PDBFlex
90 % 1 4 17541
70 % 658 2222 2
50 % 1367 4587 1
40 % 1367 4587 1
30 % 1531 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.