Sequence Similarity Clusters for the Entities in PDB 1GAF

Entity #1 | Chains: L
CHIMERIC 48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33779
95 % 4 5 14695 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 2.9
PDBFlex
90 % 247 780 2
70 % 760 2553 1
50 % 1563 5180 1
40 % 1827 5834 1
30 % 2240 7269 1
Entity #2 | Chains: H
CHIMERIC 48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33778
95 % 1 4 17375 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.0
PDBFlex
90 % 1 5 14313
70 % 753 2511 2
50 % 1564 5180 1
40 % 1828 5834 1
30 % 2241 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures