Sequence Similarity Clusters for the Entities in PDB 1GAF

Entity #1 | Chains: L
CHIMERIC 48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42257
95 % 6 9 8091 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 239 788 2
70 % 744 2474 1
50 % 1526 5011 1
40 % 1526 5011 1
30 % 1746 5941 1
Entity #2 | Chains: H
CHIMERIC 48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41963
95 % 1 4 19089 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 3.9
PDBFlex
90 % 1 4 18627
70 % 736 2424 2
50 % 1527 5011 1
40 % 1527 5011 1
30 % 1747 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures