Sequence Similarity Clusters for the Entities in PDB 1GAF

Entity #1 | Chains: L
CHIMERIC 48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32673
95 % 4 5 14189 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 217 704 3
70 % 710 2395 1
50 % 1459 4857 1
40 % 1712 5475 1
30 % 2081 6818 1
Entity #2 | Chains: H
CHIMERIC 48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32672
95 % 1 4 16817 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 3.9
PDBFlex
90 % 1 5 13842
70 % 703 2355 2
50 % 1460 4857 1
40 % 1713 5475 1
30 % 2082 6818 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures