Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2809
95 % 7 10 3504 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 9 13 2721
70 % 84 128 181
50 % 84 128 223
40 % 84 128 241
30 % 84 131 248
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 38 712
95 % 25 43 847 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 25 43 880
70 % 25 43 911
50 % 25 43 956
40 % 25 43 983
30 % 25 43 958
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41001
95 % 22 32 1132 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 501 724 3
70 % 1613 2346 1
50 % 3270 4752 1
40 % 3270 4752 1
30 % 3844 5606 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39754
95 % 19 25 1415 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 19 25 1441
70 % 1578 2299 2
50 % 3271 4752 1
40 % 3271 4752 1
30 % 3845 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2NXY 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
2 2NY2 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
3 2NY4 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
4 2NY3 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
5 2NY1 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
6 2NXZ 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
7 2NY0 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
8 1YYM 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
9 2I5Y 3 H, R Antibody 17B Heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
10 1RZ8 2 B, D Fab 17b heavy chain 9606
11 2I60 3 H, R ANTIBODY 17B HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
12 2NY5 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
13 1RZJ 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606
14 1GC1 4 H ANTIBODY 17B MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 ANTIGEN-BINDING FRAGMENT, FAB 9606
15 1G9M 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
16 1YYL 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
17 2NY6 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
18 1RZK 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606
19 1G9N 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
20 4JM2 4 D 17b Heavy chain Fab 9606
21 4RQS 3 D 17b Fab Heavy Chain 9606
22 5VN3 5 H, K, M 17b Fab heavy chain 9606
23 5THR 5 M, N, O 17b Fab VH domain 9606
24 5A8H 4 D, J, P FAB OF BROADLY NEUTRALIZING ANTIBODY 17B 9606
25 5A7X 4 D, H, L FAB OF BROADLY NEUTRALIZING ANTIBODY 17B 9606