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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 1712 Members. Sequence cutoff: 90% Cluster size: 21 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2NXY 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
2 2NY2 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
3 2NY4 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
4 2NY3 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
5 2NY1 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
6 2NXZ 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
7 2NY0 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
8 1YYM 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606  
9 2I5Y 3 H, R Antibody 17B Heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606  
10 1RZ8 2 B, D Fab 17b heavy chain 9606  
11 2I60 3 H, R ANTIBODY 17B HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
12 2NY5 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
13 1RZJ 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606  
14 1GC1 4 H ANTIBODY 17B MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 ANTIGEN-BINDING FRAGMENT, FAB 9606  
15 1G9M 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
16 1YYL 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606  
17 2NY6 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
18 1RZK 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606  
19 1G9N 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
20 4JM2 4 D 17b Heavy chain Fab 9606  
21 4RQS 3 D 17b Fab Heavy Chain 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4189
95% 6 7 4776
90% 8 10 3082
70% 22 29 1085
50% 22 29 1145
40% 22 29 1168
30% 22 31 1066
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 843
95% 25 35 945
90% 25 35 964
70% 25 35 997
50% 25 35 1042
40% 25 35 1067
30% 25 35 1046
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31570
95% 19 21 1667
90% 270 379 5
70% 969 1337 3
50% 2294 3184 1
40% 2295 3185 1
30% 2671 3767 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30595
95% 19 21 1665
90% 19 21 1712
70% 1105 1535 2
50% 2295 3184 1
40% 2296 3185 1
30% 2672 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.