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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 30358 Members. Sequence cutoff: 100% Cluster size: 2 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1G9M 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
2 1G9N 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4156
95% 6 7 4748
90% 8 10 3049
70% 22 29 1075
50% 22 29 1140
40% 22 29 1161
30% 22 31 1061
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 835
95% 25 35 936
90% 25 35 956
70% 25 35 991
50% 25 35 1037
40% 25 35 1062
30% 25 35 1040
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31333
95% 19 21 1655
90% 269 377 5
70% 966 1332 3
50% 2284 3170 1
40% 2285 3171 1
30% 2661 3753 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30358
95% 19 21 1653
90% 19 21 1698
70% 1100 1528 2
50% 2285 3170 1
40% 2286 3171 1
30% 2662 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.