Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 3248
95 % 8 11 3434 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 9 13 2855
70 % 88 182 132
50 % 88 182 161
40 % 88 182 172
30 % 88 185 188
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 868
95 % 25 43 888 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 25 43 924
70 % 25 43 951
50 % 25 43 993
40 % 25 43 1010
30 % 25 43 1005
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17219
95 % 23 34 1096 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.1
PDBFlex
90 % 541 783 2
70 % 1768 2576 1
50 % 3592 5225 1
40 % 4066 5883 1
30 % 5047 7321 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 24 1344
95 % 19 25 1475 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 19 25 1499
70 % 1735 2532 2
50 % 3593 5225 1
40 % 4067 5883 1
30 % 5048 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2NXY 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
2 2NY2 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
3 2NY4 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
4 2NY3 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
5 2NY1 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
6 2NXZ 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
7 2NY0 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
8 1YYM 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
9 2I5Y 3 H, R Antibody 17B Heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
10 2I60 3 H, R ANTIBODY 17B HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
11 2NY5 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
12 1RZJ 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606
13 1GC1 4 H ANTIBODY 17B MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 ANTIGEN-BINDING FRAGMENT, FAB 9606
14 1G9M 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
15 1YYL 3 H, R antibody 17b heavy chain ANTIGEN-BINDING FRAGMENT, FAB 9606
16 2NY6 4 D ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
17 1RZK 4 H ANTIBODY 17B, HEAVY CHAIN FAB 9606
18 1G9N 4 H ANTIBODY 17B, HEAVY CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
19 4JM2 4 D 17b Heavy chain Fab 9606
20 4RQS 3 D 17b Fab Heavy Chain 9606
21 5VN3 5 H, K, M 17b Fab heavy chain 9606
22 5THR 5 M, N, O 17b Fab VH domain 9606
23 5A8H 4 D, J, P FAB OF BROADLY NEUTRALIZING ANTIBODY 17B 9606
24 5A7X 4 D, H, L FAB OF BROADLY NEUTRALIZING ANTIBODY 17B 9606