Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2884
95 % 6 9 3604
90 % 8 12 2745
70 % 83 126 179
50 % 83 126 219
40 % 83 126 240
30 % 83 129 246
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 38 685
95 % 25 43 824
90 % 25 43 852
70 % 25 43 888
50 % 25 43 929
40 % 25 43 952
30 % 25 43 927
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39636
95 % 19 25 1367 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 472 683 3
70 % 1287 1841 2
50 % 3138 4537 1
40 % 3138 4537 1
30 % 3675 5342 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38430
95 % 19 25 1365 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 19 25 1386
70 % 1517 2197 1
50 % 3139 4537 1
40 % 3139 4537 1
30 % 3676 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H8W 4 C T-cell surface glycoprotein CD4 9606
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
4 1CDY 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
5 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
6 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
7 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
8 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
9 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606
10 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
11 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
12 3S5L 4 G, H T-cell surface glycoprotein CD4 CD4 9606
13 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
14 1CDU 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
15 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606
16 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
17 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
18 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
19 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
20 3JWD 2 C, D T-cell surface glycoprotein CD4 9606
21 3S4S 4 G, H T-cell surface glycoprotein CD4 UNP residues 26-203 9606
22 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
23 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
24 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
25 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
26 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606
27 5CAY 2 B T-cell surface glycoprotein CD4 domains 1 and 2 (UNP residues 26-208) 9606
28 4P9H 1 C T-cell surface glycoprotein CD4 CD4 D1D2 9606
29 4R2G 2 B, F, H, L T-cell surface glycoprotein CD4 9606
30 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606
31 3LQA 1 C T-cell surface glycoprotein CD4 9606
32 3JWO 2 C T-cell surface glycoprotein CD4 9606
33 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
34 4RQS 1 B 2-domain CD4 9606
35 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606
36 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606
37 5VN3 4 C, E, F T-cell surface glycoprotein CD4 9606
38 5THR 3 G, H, I T-cell surface glycoprotein CD4 UNP residues 26-207 9606
39 3JCB 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
40 3JCC 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
41 5A8H 2 B, H, N T-CELL SURFACE GLYCOPROTEIN CD4 SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208 9606
42 5A7X 2 B, F, J T-CELL SURFACE GLYCOPROTEIN CD4 9606
43 3J70 3 C, O, T T-cell surface glycoprotein CD4 UNP residues 26-208 9606