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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 1120 Members. Sequence cutoff: 30% Cluster size: 33 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4H8W 4 C T-cell surface glycoprotein CD4 9606  
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
4 1CDY 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606  
5 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
6 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
7 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
8 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
9 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606  
10 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606  
11 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
12 3S5L 4 G, H T-cell surface glycoprotein CD4 CD4 9606  
13 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606  
14 1CDU 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606  
15 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606  
16 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
17 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
18 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
19 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
20 3JWD 2 C, D T-cell surface glycoprotein CD4 9606  
21 3S4S 4 G, H T-cell surface glycoprotein CD4 UNP residues 26-203 9606  
22 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606  
23 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
24 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
25 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
26 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606  
27 4P9H 1 C T-cell surface glycoprotein CD4 CD4 D1D2 9606  
28 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606  
29 3LQA 1 C T-cell surface glycoprotein CD4 9606  
30 3JWO 2 C T-cell surface glycoprotein CD4 9606  
31 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606  
32 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606  
33 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4370
95% 6 6 4970
90% 8 9 3126
70% 22 27 1155
50% 22 27 1218
40% 22 27 1253
30% 22 29 1153
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 28 921
95% 25 33 979
90% 25 33 1003
70% 25 33 1034
50% 25 33 1102
40% 25 33 1131
30% 25 33 1120
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30243
95% 19 20 1583
90% 262 365 4
70% 941 1291 3
50% 2230 3070 1
40% 2231 3071 1
30% 2593 3629 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29309
95% 19 20 1579
90% 19 20 1627
70% 1075 1480 2
50% 2231 3070 1
40% 2232 3071 1
30% 2594 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.