Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2850
95 % 7 10 3545 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 9 13 2750
70 % 85 129 182
50 % 85 129 223
40 % 85 129 241
30 % 85 132 248
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 38 718
95 % 25 43 861 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 25 43 893
70 % 25 43 921
50 % 25 43 966
40 % 25 43 990
30 % 25 43 967
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41440
95 % 22 32 1148 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 518 746 3
70 % 1650 2392 1
50 % 3343 4843 1
40 % 3343 4843 1
30 % 3924 5705 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40176
95 % 19 25 1428 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 19 25 1456
70 % 1612 2342 2
50 % 3344 4843 1
40 % 3344 4843 1
30 % 3925 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H8W 4 C T-cell surface glycoprotein CD4 9606
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
4 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
5 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
6 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
7 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
8 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606
9 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
10 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
11 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
12 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606
13 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
14 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
15 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
16 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
17 3JWD 2 C, D T-cell surface glycoprotein CD4 9606
18 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
19 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
20 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
21 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
22 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606
23 5CAY 2 B T-cell surface glycoprotein CD4 domains 1 and 2 (UNP residues 26-208) 9606
24 4R2G 2 B, F, H, L T-cell surface glycoprotein CD4 9606
25 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606
26 3LQA 1 C T-cell surface glycoprotein CD4 9606
27 3JWO 2 C T-cell surface glycoprotein CD4 9606
28 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
29 4RQS 1 B 2-domain CD4 9606
30 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606
31 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606
32 5VN3 4 C, E, F T-cell surface glycoprotein CD4 9606
33 5THR 3 G, H, I T-cell surface glycoprotein CD4 UNP residues 26-207 9606
34 3JCB 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
35 3JCC 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
36 5A8H 2 B, H, N T-CELL SURFACE GLYCOPROTEIN CD4 SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208 9606
37 5A7X 2 B, F, J T-CELL SURFACE GLYCOPROTEIN CD4 9606
38 3J70 3 C, O, T T-cell surface glycoprotein CD4 UNP residues 26-208 9606