Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2528
95 % 6 9 3218
90 % 8 12 2377
70 % 79 120 165
50 % 79 120 196
40 % 79 120 212
30 % 79 123 222
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 34 715
95 % 25 39 812
90 % 25 39 851
70 % 25 39 900
50 % 25 39 947
40 % 25 39 968
30 % 25 39 962
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35632
95 % 19 23 1474
90 % 333 482 4
70 % 1121 1583 3
50 % 2707 3846 1
40 % 2708 3847 1
30 % 3185 4574 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 34531
95 % 19 23 1470
90 % 19 23 1499
70 % 1312 1866 1
50 % 2708 3846 1
40 % 2709 3847 1
30 % 3186 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676
4 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676
5 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676
6 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676
7 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606
8 5A8H 1 A, G, M HIV-1 GP120 11676
9 5A7X 1 A, E, I HIV-1 YU2 GP120 11676