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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 3006 Members. Sequence cutoff: 95% Cluster size: 9 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
5 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
6 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
8 5A8H 1 A, G, M HIV-1 GP120 11676  
9 5A7X 1 A, E, I HIV-1 YU2 GP120 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 9 2366
95% 6 9 3006
90% 8 12 2211
70% 22 31 975
50% 22 31 1024
40% 22 31 1047
30% 22 33 980
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 33 684
95% 25 38 736
90% 25 38 777
70% 25 38 821
50% 25 38 894
40% 25 38 925
30% 25 38 915
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 33200
95% 19 23 1375
90% 303 433 4
70% 1034 1454 3
50% 2472 3477 1
40% 2473 3478 1
30% 2871 4103 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32166
95% 19 23 1370
90% 19 23 1395
70% 1195 1682 1
50% 2473 3477 1
40% 2474 3478 1
30% 2872 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.