POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 5110 Members. Sequence cutoff: 95% Cluster size: 6 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
5 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
6 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4506
95% 6 6 5110
90% 8 9 3261
70% 22 28 1097
50% 22 28 1168
40% 22 28 1186
30% 22 30 1108
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 29 856
95% 25 34 961
90% 25 34 979
70% 25 34 1007
50% 25 34 1057
40% 25 34 1086
30% 25 34 1063
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31010
95% 19 20 1695
90% 268 374 5
70% 959 1317 3
50% 2270 3136 1
40% 2271 3137 1
30% 2641 3713 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30060
95% 19 20 1691
90% 19 20 1737
70% 1093 1511 2
50% 2271 3136 1
40% 2272 3137 1
30% 2642 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.