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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 4853 Members. Sequence cutoff: 95% Cluster size: 7 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
5 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
6 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4249
95% 6 7 4853
90% 8 10 3107
70% 22 29 1090
50% 22 29 1149
40% 22 29 1176
30% 22 31 1074
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 850
95% 25 35 954
90% 25 35 973
70% 25 35 1005
50% 25 35 1046
40% 25 35 1076
30% 25 35 1055
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31790
95% 19 21 1681
90% 277 389 4
70% 977 1349 3
50% 2312 3210 1
40% 2313 3211 1
30% 2689 3793 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30811
95% 19 21 1679
90% 19 21 1727
70% 1114 1548 2
50% 2313 3210 1
40% 2314 3211 1
30% 2690 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.