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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 3131 Members. Sequence cutoff: 90% Cluster size: 10 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 4DVR 1 G glycoprotein gp120 unp residues 83-123; 199-301; 324-492 362651  
5 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
6 3HI1 1 G, J Glycoprotein 120 362651  
7 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
8 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
9 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
10 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4293
95% 6 7 4893
90% 8 10 3131
70% 22 29 1103
50% 22 29 1160
40% 22 29 1186
30% 22 31 1081
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 857
95% 25 35 968
90% 25 35 988
70% 25 35 1018
50% 25 35 1059
40% 25 35 1086
30% 25 35 1063
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32140
95% 19 21 1696
90% 293 410 4
70% 990 1377 3
50% 2346 3274 1
40% 2347 3275 1
30% 2725 3863 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31144
95% 19 21 1694
90% 19 21 1741
70% 1131 1580 2
50% 2347 3274 1
40% 2348 3275 1
30% 2726 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.