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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 3239 Members. Sequence cutoff: 90% Cluster size: 9 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 4DVR 1 G Envelope glycoprotein gp160 unp residues 43-492 362651  
5 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
6 3HI1 1 G, J Glycoprotein 120 362651  
7 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
8 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
9 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4473
95% 6 6 5073
90% 8 9 3239
70% 22 28 1083
50% 22 28 1150
40% 22 28 1171
30% 22 30 1091
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 29 851
95% 25 34 952
90% 25 34 971
70% 25 34 999
50% 25 34 1047
40% 25 34 1077
30% 25 34 1054
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30823
95% 19 20 1684
90% 266 370 5
70% 949 1303 3
50% 2250 3106 1
40% 2251 3107 1
30% 2621 3679 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29876
95% 19 20 1680
90% 19 20 1727
70% 1085 1498 2
50% 2251 3106 1
40% 2252 3107 1
30% 2622 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.