POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 3233 Members. Sequence cutoff: 90% Cluster size: 9 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 4DVR 1 G Envelope glycoprotein gp160 unp residues 43-492 362651  
5 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
6 3HI1 1 G, J Glycoprotein 120 362651  
7 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
8 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
9 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4461
95% 6 6 5064
90% 8 9 3233
70% 22 28 1083
50% 22 28 1151
40% 22 28 1169
30% 22 30 1090
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 29 851
95% 25 34 952
90% 25 34 971
70% 25 34 999
50% 25 34 1048
40% 25 34 1076
30% 25 34 1054
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30773
95% 19 20 1681
90% 265 369 5
70% 947 1301 3
50% 2246 3102 1
40% 2247 3103 1
30% 2613 3671 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29828
95% 19 20 1677
90% 19 20 1723
70% 1083 1496 2
50% 2247 3102 1
40% 2248 3103 1
30% 2614 3671 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.