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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 1155 Members. Sequence cutoff: 70% Cluster size: 27 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2NXY 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
2 2NY2 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
3 2NY4 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
4 2NY3 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
5 2NY1 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
6 2NXZ 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 2NY0 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
8 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
9 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
10 2NY7 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
11 3IDX 1 G HIV-1 HxBc2 gp120 core 11676  
12 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
13 2NY5 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
14 1RZJ 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
15 1GC1 1 G ENVELOPE PROTEIN GP120 CORE 11676  
16 1G9M 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
17 4DVR 1 G Envelope glycoprotein gp160 unp residues 43-492 362651  
18 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
19 2NY6 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
20 3HI1 1 G, J Glycoprotein 120 362651  
21 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
22 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
23 3IDY 1 A, G HIV-1 HxBc2 gp120 core 11676  
24 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
25 4JM2 5 E gp120 core with mini V3 loop 11676  
26 3LQA 2 G Envelope glycoprotein gp160 11676  
27 2B4C 1 G envelope glycoprotein CORE with V3 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 4370
95% 6 6 4970
90% 8 9 3126
70% 22 27 1155
50% 22 27 1218
40% 22 27 1253
30% 22 29 1153
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 28 921
95% 25 33 979
90% 25 33 1003
70% 25 33 1034
50% 25 33 1102
40% 25 33 1131
30% 25 33 1120
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30243
95% 19 20 1583
90% 262 365 4
70% 941 1291 3
50% 2230 3070 1
40% 2231 3071 1
30% 2593 3629 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29309
95% 19 20 1579
90% 19 20 1627
70% 1075 1480 2
50% 2231 3070 1
40% 2232 3071 1
30% 2594 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.