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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 1145 Members. Sequence cutoff: 50% Cluster size: 29 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2NXY 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
2 2NY2 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
3 2NY4 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
4 2NY3 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
5 2NY1 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
6 2NXZ 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 2NY0 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
8 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
9 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
10 2NY7 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
11 3IDX 1 G HIV-1 HxBc2 gp120 core 11676  
12 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
13 2NY5 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
14 1RZJ 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
15 1GC1 1 G ENVELOPE PROTEIN GP120 CORE 11676  
16 1G9M 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
17 4DVR 1 G glycoprotein gp120 unp residues 83-123; 199-301; 324-492 362651  
18 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
19 2NY6 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
20 3HI1 1 G, J Glycoprotein 120 362651  
21 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
22 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
23 3IDY 1 A, G HIV-1 HxBc2 gp120 core 11676  
24 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
25 4R2G 1 A, E, K, O Surface protein gp160 11688  
26 4JM2 5 E gp120 core with mini V3 loop 11676  
27 3LQA 2 G Envelope glycoprotein gp160 11676  
28 2B4C 1 G envelope glycoprotein CORE with V3 11676  
29 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4203
95% 6 7 4796
90% 8 10 3088
70% 22 29 1085
50% 22 29 1145
40% 22 29 1170
30% 22 31 1068
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 843
95% 25 35 947
90% 25 35 965
70% 25 35 998
50% 25 35 1043
40% 25 35 1069
30% 25 35 1048
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31627
95% 19 21 1668
90% 271 380 5
70% 971 1339 3
50% 2298 3188 1
40% 2299 3189 1
30% 2675 3771 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30651
95% 19 21 1666
90% 19 21 1713
70% 1107 1537 2
50% 2299 3188 1
40% 2300 3189 1
30% 2676 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.