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An Information Portal to 111558 Biological Macromolecular Structures

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 979 Members. Sequence cutoff: 30% Cluster size: 33 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2NXY 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
2 2NY2 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
3 2NY4 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
4 2NY3 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
5 2NY1 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
6 2NXZ 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 2NY0 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
8 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
9 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
10 2NY7 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
11 3IDX 1 G HIV-1 HxBc2 gp120 core 11676  
12 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
13 2NY5 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
14 1RZJ 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
15 1GC1 1 G ENVELOPE PROTEIN GP120 CORE 11676  
16 1G9M 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
17 4DVR 1 G glycoprotein gp120 unp residues 83-123; 199-301; 324-492 362651  
18 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
19 2NY6 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
20 3HI1 1 G, J Glycoprotein 120 362651  
21 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
22 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
23 3IDY 1 A, G HIV-1 HxBc2 gp120 core 11676  
24 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676  
25 4R2G 1 A, E, K, O Surface protein gp160 11688  
26 4JM2 5 E gp120 core with mini V3 loop 11676  
27 3LQA 2 G Envelope glycoprotein gp160 11676  
28 2B4C 1 G envelope glycoprotein CORE with V3 11676  
29 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
30 3FUS 1 A EXTERIOR MEMBRANE GLYCOPROTEIN GP120 GP120 CORE, RESIDUES 66-109, 209-311, 342-502 11723  
31 2BF1 1 A EXTERIOR MEMBRANE GLYCOPROTEIN GP120 GP120 CORE, RESIDUES 66-109,209-311,342-502 11723  
32 5A8H 1 A, G, M HIV-1 GP120 11676  
33 5A7X 1 A, E, I HIV-1 YU2 GP120 11676  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 9 2357
95% 6 9 2997
90% 8 12 2207
70% 22 31 973
50% 22 31 1021
40% 22 31 1044
30% 22 33 979
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 33 683
95% 25 38 739
90% 25 38 780
70% 25 38 822
50% 25 38 893
40% 25 38 922
30% 25 38 915
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 33131
95% 19 23 1374
90% 303 431 4
70% 1029 1445 3
50% 2462 3457 1
40% 2463 3458 1
30% 2861 4083 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32104
95% 19 23 1369
90% 19 23 1393
70% 1190 1672 1
50% 2463 3457 1
40% 2464 3458 1
30% 2862 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.