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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Cluster # 4286 Members. Sequence cutoff: 100% Cluster size: 7 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1YYM 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
2 2I5Y 1 G, P Exterior membrane glycoprotein(GP120) CORE 12721  
3 2I60 1 G, P EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) CORE 11676  
4 1YYL 1 G, P Exterior membrane glycoprotein(GP120) core 11676  
5 1RZK 1 G ENVELOPE GLYCOPROTEIN GP120 part of Envelope polyprotein GP160 CORE 11676  
6 1G9N 1 G ENVELOPE GLYCOPROTEIN GP120 CORE 11676  
7 4RQS 4 G HIV-1 YU2 gp120 core chimeric protein 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4286
95% 6 7 4884
90% 8 10 3130
70% 22 29 1101
50% 22 29 1159
40% 22 29 1185
30% 22 31 1080
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 852
95% 25 35 965
90% 25 35 985
70% 25 35 1015
50% 25 35 1057
40% 25 35 1085
30% 25 35 1061
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32084
95% 19 21 1691
90% 277 389 5
70% 988 1366 3
50% 2342 3252 1
40% 2343 3253 1
30% 2721 3839 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31094
95% 19 21 1689
90% 19 21 1737
70% 1129 1569 2
50% 2343 3252 1
40% 2344 3253 1
30% 2722 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.