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HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4369
95% 6 7 4983
90% 8 10 3177
70% 22 29 1113
50% 22 29 1176
40% 22 29 1201
30% 22 31 1095
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 866
95% 25 35 984
90% 25 35 1005
70% 25 35 1036
50% 25 35 1081
40% 25 35 1102
30% 25 35 1077
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 32568
95% 19 21 1724
90% 297 418 4
70% 1010 1412 3
50% 2395 3355 1
40% 2396 3356 1
30% 2788 3971 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31555
95% 19 21 1722
90% 19 21 1768
70% 1157 1622 2
50% 2396 3355 1
40% 2397 3356 1
30% 2789 3971 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.