Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2837
95 % 6 9 3556
90 % 8 12 2710
70 % 83 126 179
50 % 83 126 218
40 % 83 126 239
30 % 83 129 243
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 37 712
95 % 25 42 846
90 % 25 42 881
70 % 25 42 912
50 % 25 42 964
40 % 25 42 984
30 % 25 42 960
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39036
95 % 19 24 1475
90 % 462 665 3
70 % 1268 1803 2
50 % 3092 4435 1
40 % 3092 4435 1
30 % 3619 5225 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37854
95 % 19 24 1473
90 % 19 24 1500
70 % 1494 2145 1
50 % 3093 4435 1
40 % 3093 4435 1
30 % 3620 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.