POP-OUT | CLOSE

An Information Portal to 105906 Biological Macromolecular Structures

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9N
Sequence Clusters for the Sequence Entities in PDB 1G9N
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4144
95% 6 7 4736
90% 8 10 3041
70% 22 29 1074
50% 22 29 1140
40% 22 29 1161
30% 22 31 1061
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 30 833
95% 25 35 933
90% 25 35 953
70% 25 35 988
50% 25 35 1036
40% 25 35 1061
30% 25 35 1039
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31265
95% 19 21 1652
90% 269 376 5
70% 965 1330 3
50% 2282 3162 1
40% 2283 3163 1
30% 2653 3739 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30299
95% 19 21 1650
90% 19 21 1695
70% 1099 1524 2
50% 2283 3162 1
40% 2284 3163 1
30% 2654 3739 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.