Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2552
95 % 6 9 3246
90 % 8 12 2402
70 % 79 120 166
50 % 79 120 196
40 % 79 120 213
30 % 79 123 222
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 34 723
95 % 25 39 831
90 % 25 39 865
70 % 25 39 906
50 % 25 39 950
40 % 25 39 972
30 % 25 39 967
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35843
95 % 19 23 1483
90 % 346 500 4
70 % 1142 1609 3
50 % 2753 3902 1
40 % 2754 3903 1
30 % 3232 4631 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 34741
95 % 19 23 1479
90 % 19 23 1510
70 % 1335 1894 1
50 % 2754 3902 1
40 % 2755 3903 1
30 % 3233 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.