Sequence Similarity Clusters for the Entities in PDB 1G9N

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2933
95 % 6 9 3659
90 % 8 12 2783
70 % 83 126 178
50 % 83 126 221
40 % 83 126 240
30 % 83 129 248
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 38 699
95 % 25 43 833
90 % 25 43 863
70 % 25 43 895
50 % 25 43 941
40 % 25 43 968
30 % 25 43 940
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40281
95 % 22 32 1110
90 % 481 697 3
70 % 1566 2280 1
50 % 3176 4619 1
40 % 3176 4619 1
30 % 3725 5440 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39057
95 % 19 25 1390
90 % 19 25 1413
70 % 1536 2238 2
50 % 3177 4619 1
40 % 3177 4619 1
30 % 3726 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.