Sequence Similarity Clusters for the Entities in PDB 1G9M

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33474
95 % 13 15 3772
90 % 13 15 3805
70 % 67 125 172
50 % 67 125 211
40 % 67 125 234
30 % 67 128 239
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 35 717
95 % 19 40 859
90 % 19 40 891
70 % 19 40 922
50 % 19 40 966
40 % 19 40 989
30 % 19 40 971
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38212
95 % 15 24 1442
90 % 333 632 3
70 % 940 1752 2
50 % 2295 4272 1
40 % 2295 4272 1
30 % 2619 5038 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37056
95 % 15 24 1440
90 % 15 24 1466
70 % 1115 2066 1
50 % 2296 4272 1
40 % 2296 4272 1
30 % 2620 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.