Sequence Similarity Clusters for the Entities in PDB 1G9M

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 31870
95 % 13 15 3563
90 % 13 15 3600
70 % 65 121 167
50 % 65 121 199
40 % 65 121 217
30 % 65 124 223
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 34 730
95 % 19 39 848
90 % 19 39 883
70 % 19 39 924
50 % 19 39 972
40 % 19 39 987
30 % 19 39 982
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36403
95 % 15 23 1515
90 % 261 518 3
70 % 875 1639 3
50 % 2133 3985 1
40 % 2134 3986 1
30 % 2437 4715 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35294
95 % 15 23 1511
90 % 15 23 1543
70 % 1039 1932 1
50 % 2134 3985 1
40 % 2135 3986 1
30 % 2438 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.