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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9M
Sequence Clusters for the Sequence Entities in PDB 1G9M
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27938
95% 13 15 3088
90% 13 15 3128
70% 16 29 1100
50% 16 29 1159
40% 16 29 1184
30% 16 31 1078
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 30 852
95% 19 35 965
90% 19 35 985
70% 19 35 1015
50% 19 35 1057
40% 19 35 1084
30% 19 35 1060
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32021
95% 15 21 1691
90% 202 389 5
70% 739 1361 3
50% 1769 3242 1
40% 1770 3243 1
30% 1995 3827 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31034
95% 15 21 1689
90% 15 21 1737
70% 859 1564 2
50% 1770 3242 1
40% 1771 3243 1
30% 1996 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.