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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9M
Sequence Clusters for the Sequence Entities in PDB 1G9M
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27291
95% 13 15 3002
90% 13 15 3042
70% 16 29 1074
50% 16 29 1140
40% 16 29 1161
30% 16 31 1061
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 30 833
95% 19 35 933
90% 19 35 953
70% 19 35 988
50% 19 35 1036
40% 19 35 1061
30% 19 35 1039
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31265
95% 15 21 1652
90% 195 376 5
70% 725 1330 3
50% 1727 3162 1
40% 1728 3163 1
30% 1951 3739 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30299
95% 15 21 1650
90% 15 21 1695
70% 838 1524 2
50% 1728 3162 1
40% 1729 3163 1
30% 1952 3739 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.