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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9M
Sequence Clusters for the Sequence Entities in PDB 1G9M
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27756
95% 13 15 3071
90% 13 15 3108
70% 16 29 1090
50% 16 29 1149
40% 16 29 1176
30% 16 31 1074
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 30 850
95% 19 35 954
90% 19 35 973
70% 19 35 1005
50% 19 35 1046
40% 19 35 1076
30% 19 35 1055
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31790
95% 15 21 1681
90% 202 389 4
70% 734 1349 3
50% 1751 3210 1
40% 1752 3211 1
30% 1977 3793 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30811
95% 15 21 1679
90% 15 21 1727
70% 850 1548 2
50% 1752 3210 1
40% 1753 3211 1
30% 1978 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.