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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9M
Sequence Clusters for the Sequence Entities in PDB 1G9M
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27138
95% 13 15 2977
90% 13 15 3014
70% 16 28 1097
50% 16 28 1169
40% 16 28 1188
30% 16 30 1107
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 29 857
95% 19 34 960
90% 19 34 978
70% 19 34 1007
50% 19 34 1057
40% 19 34 1086
30% 19 34 1063
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31077
95% 15 20 1698
90% 195 374 5
70% 722 1320 3
50% 1721 3142 1
40% 1722 3143 1
30% 1945 3719 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30126
95% 15 20 1694
90% 15 20 1741
70% 835 1514 2
50% 1722 3142 1
40% 1723 3143 1
30% 1946 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.