Sequence Similarity Clusters for the Entities in PDB 1G9M

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35344
95 % 13 15 3973
90 % 13 15 4010
70 % 68 126 178
50 % 68 126 221
40 % 68 126 240
30 % 68 129 248
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 38 699
95 % 19 43 833
90 % 19 43 863
70 % 19 43 895
50 % 19 43 941
40 % 19 43 968
30 % 19 43 940
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40281
95 % 17 32 1110
90 % 367 697 3
70 % 1199 2280 1
50 % 2450 4619 1
40 % 2450 4619 1
30 % 2805 5440 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39057
95 % 15 25 1390
90 % 15 25 1413
70 % 1191 2238 2
50 % 2451 4619 1
40 % 2451 4619 1
30 % 2806 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.