Sequence Similarity Clusters for the Entities in PDB 1G9M

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 32210
95 % 13 15 3602
90 % 13 15 3643
70 % 65 122 167
50 % 65 122 198
40 % 65 122 215
30 % 65 125 226
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 34 735
95 % 19 39 855
90 % 19 39 889
70 % 19 39 931
50 % 19 39 981
40 % 19 39 995
30 % 19 39 987
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36788
95 % 15 23 1538
90 % 313 590 3
70 % 885 1653 3
50 % 2160 4026 1
40 % 2161 4028 1
30 % 2468 4764 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35665
95 % 15 23 1534
90 % 15 23 1570
70 % 1052 1952 1
50 % 2161 4026 1
40 % 2162 4028 1
30 % 2469 4764 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.