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HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B
Sequence Clustering and Redundancy Reduction Results
1G9M
Sequence Clusters for the Sequence Entities in PDB 1G9M
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27996
95% 13 15 3090
90% 13 15 3131
70% 16 29 1101
50% 16 29 1159
40% 16 29 1185
30% 16 31 1080
Entity #2: Chains: C - T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 30 852
95% 19 35 965
90% 19 35 985
70% 19 35 1015
50% 19 35 1057
40% 19 35 1085
30% 19 35 1061
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32084
95% 15 21 1691
90% 202 389 5
70% 741 1366 3
50% 1773 3252 1
40% 1774 3253 1
30% 2001 3839 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31094
95% 15 21 1689
90% 15 21 1737
70% 861 1569 2
50% 1774 3252 1
40% 1775 3253 1
30% 2002 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.