Sequence Similarity Clusters for the Entities in PDB 1G9M

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33130
95 % 13 15 3755
90 % 13 15 3789
70 % 67 125 171
50 % 67 125 206
40 % 67 125 230
30 % 67 128 232
Entity #2 | Chains: C
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 35 708
95 % 19 40 843
90 % 19 40 878
70 % 19 40 911
50 % 19 40 951
40 % 19 40 974
30 % 19 40 957
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37840
95 % 15 24 1426
90 % 332 624 3
70 % 931 1729 2
50 % 2273 4220 1
40 % 2273 4221 1
30 % 2585 4972 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36689
95 % 15 24 1424
90 % 15 24 1450
70 % 1104 2041 1
50 % 2274 4220 1
40 % 2274 4221 1
30 % 2586 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.