Sequence Similarity Clusters for the Entities in PDB 1G6R

Entity #1 | Chains: A,C
ALPHA T CELL RECEPTOR protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10964
95 % 4 4 10936 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 4 10790
70 % 42 42 938
50 % 321 334 76
40 % 321 334 98
30 % 5308 5941 1
Entity #2 | Chains: B,D
BETA T CELL RECEPTOR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10843
95 % 9 11 3250 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 19 21 1523
70 % 329 343 25
50 % 332 346 67
40 % 332 346 89
30 % 5309 5941 1
Entity #3 | Chains: H,I
MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I MOLECULE protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 49 434
95 % 64 65 413 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 69 70 388
70 % 720 732 6
50 % 722 737 7
40 % 771 788 10
30 % 898 919 15
Entity #4 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 135 136 98
95 % 233 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 233 234 65
70 % 912 936 4
50 % 933 958 3
40 % 933 958 7
30 % 933 958 12
Entity #5 | Chains: P,Q
SIYR PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures