Sequence Similarity Clusters for the Entities in PDB 1G6R

Entity #1 | Chains: A,C
ALPHA T CELL RECEPTOR protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10539
95 % 4 4 10547 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 4 10405
70 % 25 25 1302
50 % 290 303 79
40 % 290 303 96
30 % 4980 5571 1
Entity #2 | Chains: B,D
BETA T CELL RECEPTOR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10425
95 % 9 11 3121 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 17 19 1595
70 % 298 312 29
50 % 301 315 72
40 % 301 315 92
30 % 4981 5571 1
Entity #3 | Chains: H,I
MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I MOLECULE protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 49 410
95 % 64 65 366 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 69 70 368
70 % 704 716 6
50 % 706 721 6
40 % 755 772 10
30 % 875 896 15
Entity #4 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 134 135 96
95 % 227 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 227 228 65
70 % 889 912 4
50 % 910 934 3
40 % 910 934 7
30 % 910 934 12
Entity #5 | Chains: P,Q
SIYR PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.