Sequence Similarity Clusters for the Entities in PDB 1G6R

Entity #1 | Chains: A,C
ALPHA T CELL RECEPTOR protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10785
95 % 4 4 10768 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 4 10622
70 % 25 25 1330
50 % 292 305 82
40 % 292 305 99
30 % 5166 5780 1
Entity #2 | Chains: B,D
BETA T CELL RECEPTOR protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10665
95 % 9 11 3214 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 19 21 1506
70 % 300 314 29
50 % 303 317 75
40 % 303 317 96
30 % 5167 5780 1
Entity #3 | Chains: H,I
MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I MOLECULE protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 49 432
95 % 64 65 399 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 69 70 374
70 % 715 727 6
50 % 717 732 6
40 % 766 783 10
30 % 888 909 15
Entity #4 | Chains: L,M
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 134 135 97
95 % 229 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 229 230 66
70 % 900 924 4
50 % 921 946 3
40 % 921 946 7
30 % 921 946 12
Entity #5 | Chains: P,Q
SIYR PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures