Sequence Similarity Clusters for the Entities in PDB 1G1X

Entity #1 | Chains: D,I
16S RIBOSOMAL RNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,J
16S RIBOSOMAL RNA rna, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,F
30S RIBOSOMAL PROTEIN S6 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 275 27
95 % 90 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 90 281 41
70 % 90 281 52
50 % 90 281 88
40 % 90 281 109
30 % 108 352 93
Entity #4 | Chains: B,G
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28751
95 % 86 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 86 278 43
70 % 86 278 54
50 % 108 425 25
40 % 108 430 35
30 % 108 430 54
Entity #5 | Chains: C,H
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 51 705
95 % 77 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 77 235 70
70 % 77 235 83
50 % 77 235 111
40 % 77 235 135
30 % 77 235 143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.