Sequence Similarity Clusters for the Entities in PDB 1G1X

Entity #1 | Chains: D,I
16S RIBOSOMAL RNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,J
16S RIBOSOMAL RNA rna, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,F
30S RIBOSOMAL PROTEIN S6 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 289 26
95 % 96 295 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 96 295 39
70 % 96 295 48
50 % 96 295 88
40 % 96 295 110
30 % 114 378 86
Entity #4 | Chains: B,G
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30362
95 % 92 292 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 92 292 41
70 % 92 292 51
50 % 114 453 26
40 % 114 458 36
30 % 114 458 55
Entity #5 | Chains: C,H
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 51 749
95 % 81 241 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 81 241 69
70 % 81 241 84
50 % 81 241 114
40 % 81 241 139
30 % 81 241 146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures