Sequence Similarity Clusters for the Entities in PDB 1G1S

Entity #1 | Chains: A,B
P-SELECTIN protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7293
95 % 1 3 7395 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.4
PDBFlex
90 % 1 3 7352
70 % 1 3 7144
50 % 3 7 4740
40 % 3 7 4463
30 % 3 7 4030
Entity #2 | Chains: C,D
PSGL-1 PEPTIDE protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38763
95 % 1 1 32799
90 % 1 1 31411
70 % 1 1 28099
50 % 1 1 24035
40 % 1 1 21154
30 % 1 1 17650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures