Sequence Similarity Clusters for the Entities in PDB 1G0U

Entity #1 | Chains: A,O
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 14
95 % 173 252 24 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 173 252 25
70 % 173 252 34
50 % 184 281 44
40 % 736 1144 3
30 % 1285 1989 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 251 17
95 % 173 251 29 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 173 251 30
70 % 173 251 39
50 % 173 251 71
40 % 184 280 57
30 % 184 280 74
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 134 81
95 % 138 199 57 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 138 199 62
70 % 181 253 27
50 % 181 254 65
40 % 181 254 84
30 % 376 557 12
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT C5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 219 24
95 % 173 252 25 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 26
70 % 173 252 35
50 % 173 252 70
40 % 184 280 56
30 % 184 281 70
Entity #13 | Chains: 1,M
PROTEASOME COMPONENT PRE4 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 9
95 % 173 252 18 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 173 252 20
70 % 173 252 29
50 % 173 252 69
40 % 184 270 61
30 % 184 270 78
Entity #14 | Chains: 2,N
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 15
95 % 173 252 27 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 173 252 28
70 % 173 252 37
50 % 184 270 50
40 % 184 270 62
30 % 377 557 12
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 11
95 % 173 252 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 173 252 22
70 % 173 252 31
50 % 184 281 43
40 % 737 1144 3
30 % 1286 1989 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT PRE6 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 12
95 % 173 252 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 23
70 % 173 252 32
50 % 184 281 46
40 % 738 1144 3
30 % 1287 1989 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PUP2 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38163
95 % 1 1 29403 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 173 253 19
70 % 173 253 28
50 % 184 282 39
40 % 739 1144 3
30 % 1288 1989 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20223
95 % 173 252 26 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 173 252 27
70 % 173 252 36
50 % 184 281 45
40 % 184 281 55
30 % 1289 1989 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT C1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 36 441
95 % 13 36 611 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 13 36 641
70 % 13 36 679
50 % 24 65 329
40 % 24 65 348
30 % 1290 1989 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 13
95 % 173 252 23 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 173 252 24
70 % 173 252 33
50 % 184 280 47
40 % 184 281 53
30 % 1291 1989 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 217 23
95 % 173 252 20 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 173 252 21
70 % 173 252 30
50 % 184 281 41
40 % 184 281 51
30 % 184 281 69
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 252 16
95 % 173 252 28
90 % 173 252 29
70 % 173 252 38
50 % 184 280 48
40 % 184 281 54
30 % 184 281 71

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.