Sequence Similarity Clusters for the Entities in PDB 1G0U

Entity #1 | Chains: A,O
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 16
95 % 173 252 28 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 173 252 30
70 % 173 252 38
50 % 184 286 47
40 % 736 1165 3
30 % 1285 2025 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 251 19
95 % 173 251 33 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 173 251 35
70 % 173 251 43
50 % 173 251 81
40 % 184 285 69
30 % 184 285 84
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 134 94
95 % 138 199 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 138 199 64
70 % 181 254 28
50 % 181 255 75
40 % 181 255 96
30 % 376 562 13
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT C5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 219 37
95 % 173 252 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 31
70 % 173 252 39
50 % 173 252 80
40 % 184 285 67
30 % 184 286 79
Entity #13 | Chains: 1,M
PROTEASOME COMPONENT PRE4 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 11
95 % 173 252 22 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 173 252 25
70 % 173 252 33
50 % 173 252 79
40 % 184 271 86
30 % 184 271 99
Entity #14 | Chains: 2,N
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 17
95 % 173 252 31 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 173 252 33
70 % 173 252 41
50 % 184 271 64
40 % 184 271 87
30 % 377 562 13
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 13
95 % 173 252 25 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 173 252 27
70 % 173 252 35
50 % 184 286 46
40 % 737 1165 3
30 % 1286 2025 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT PRE6 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 14
95 % 173 252 26 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 28
70 % 173 252 36
50 % 184 286 51
40 % 738 1165 3
30 % 1287 2025 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PUP2 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40338
95 % 1 1 31024
90 % 173 253 24
70 % 173 253 32
50 % 184 287 44
40 % 739 1165 3
30 % 1288 2025 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21520
95 % 173 252 30 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 173 252 32
70 % 173 252 40
50 % 184 286 50
40 % 184 286 66
30 % 1289 2025 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT C1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 36 462
95 % 13 36 637 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 13 36 666
70 % 13 36 715
50 % 24 70 368
40 % 24 70 384
30 % 1290 2025 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 15
95 % 173 252 27 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 173 252 29
70 % 173 252 37
50 % 184 285 52
40 % 184 286 63
30 % 1291 2025 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 217 36
95 % 173 252 24 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 173 252 26
70 % 173 252 34
50 % 184 286 45
40 % 184 286 62
30 % 184 286 78
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 18
95 % 173 252 32 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 173 252 34
70 % 173 252 42
50 % 184 285 53
40 % 184 286 64
30 % 184 286 80

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures