Sequence Similarity Clusters for the Entities in PDB 1G0U

Entity #1 | Chains: A,O
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 15
95 % 173 252 28 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 173 252 29
70 % 173 252 38
50 % 184 282 45
40 % 736 1149 3
30 % 1285 1997 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 251 18
95 % 173 251 33 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 173 251 34
70 % 173 251 43
50 % 173 251 80
40 % 184 281 61
30 % 184 281 78
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 134 88
95 % 138 199 58 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 138 199 62
70 % 181 254 27
50 % 181 255 70
40 % 181 255 91
30 % 376 560 13
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT C5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 219 25
95 % 173 252 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 30
70 % 173 252 39
50 % 173 252 78
40 % 184 281 60
30 % 184 282 76
Entity #13 | Chains: 1,M
PROTEASOME COMPONENT PRE4 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 10
95 % 173 252 22 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 173 252 24
70 % 173 252 33
50 % 173 252 77
40 % 184 271 68
30 % 184 271 84
Entity #14 | Chains: 2,N
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 16
95 % 173 252 31 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 173 252 32
70 % 173 252 41
50 % 184 271 54
40 % 184 271 69
30 % 377 560 13
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 12
95 % 173 252 25 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 173 252 26
70 % 173 252 35
50 % 184 282 44
40 % 737 1149 3
30 % 1286 1997 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT PRE6 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 13
95 % 173 252 26 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 173 252 27
70 % 173 252 36
50 % 184 282 47
40 % 738 1149 3
30 % 1287 1997 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PUP2 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39557
95 % 1 1 30467
90 % 173 253 22
70 % 173 253 30
50 % 184 283 42
40 % 739 1149 3
30 % 1288 1997 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21033
95 % 173 252 30 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 173 252 31
70 % 173 252 40
50 % 184 282 46
40 % 184 282 59
30 % 1289 1997 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT C1 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 36 456
95 % 13 36 631 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 13 36 659
70 % 13 36 703
50 % 24 66 363
40 % 24 66 379
30 % 1290 1997 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 14
95 % 173 252 27 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 173 252 28
70 % 173 252 37
50 % 184 281 48
40 % 184 282 56
30 % 1291 1997 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 217 24
95 % 173 252 24 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 173 252 25
70 % 173 252 34
50 % 184 282 43
40 % 184 282 55
30 % 184 282 75
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 252 17
95 % 173 252 32 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 173 252 33
70 % 173 252 42
50 % 184 281 49
40 % 184 282 57
30 % 184 282 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures