Sequence Similarity Clusters for the Entities in PDB 1FZP

Entity #1 | Chains: K,W
5'-D(P*AP*TP*AP*TP*AP*TP*A)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,D
STAPHYLOCOCCAL ACCESSORY REGULATOR A protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23862
95 % 2 3 13346 Flexibility: High
Max RMSD: 19.6, Avg RMSD: 12.1
PDBFlex
90 % 2 3 13125
70 % 2 3 12345
50 % 2 3 11002
40 % 2 3 9971
30 % 2 3 8693

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures