Sequence Similarity Clusters for the Entities in PDB 1FZP

Entity #1 | Chains: K,W
5'-D(P*AP*TP*AP*TP*AP*TP*A)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,D
STAPHYLOCOCCAL ACCESSORY REGULATOR A protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23311
95 % 2 3 13083 Flexibility: High
Max RMSD: 19.6, Avg RMSD: 12.1
PDBFlex
90 % 2 3 12861
70 % 2 3 12102
50 % 2 3 10790
40 % 2 3 9788
30 % 2 3 8534

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.