Sequence Similarity Clusters for the Entities in PDB 1FZM

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 53 454
95 % 10 65 425 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 10 70 390
70 % 193 740 6
50 % 197 754 7
40 % 199 806 9
30 % 216 930 12
Entity #2 | Chains: B
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 189 68
95 % 22 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 22 234 66
70 % 233 944 4
50 % 238 966 3
40 % 238 966 6
30 % 238 966 9
Entity #3 | Chains: P
PROTEIN (NUCLEOCAPSID PROTEIN) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures