Sequence Similarity Clusters for the Entities in PDB 1FZJ

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36383
95 % 14 65 352 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 14 70 356
70 % 224 681 6
50 % 224 686 6
40 % 236 736 10
30 % 255 853 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 133 95
95 % 33 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 33 215 68
70 % 274 872 4
50 % 279 894 4
40 % 279 894 8
30 % 279 894 14
Entity #3 | Chains: P
NUCLEOCAPSID PROTEIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.