Sequence Similarity Clusters for the Entities in PDB 1FZJ

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38805
95 % 14 65 413
90 % 14 70 388
70 % 238 732 6
50 % 238 737 7
40 % 251 788 10
30 % 274 919 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 136 98
95 % 36 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 36 234 65
70 % 291 936 4
50 % 296 958 3
40 % 296 958 7
30 % 296 958 12
Entity #3 | Chains: P
NUCLEOCAPSID PROTEIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures