Sequence Similarity Clusters for the Entities in PDB 1FZJ

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38338
95 % 14 65 399
90 % 14 70 374
70 % 236 727 6
50 % 236 732 6
40 % 249 783 10
30 % 272 909 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 135 97
95 % 36 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 36 230 66
70 % 289 924 4
50 % 294 946 3
40 % 294 946 7
30 % 294 946 12
Entity #3 | Chains: P
NUCLEOCAPSID PROTEIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures