Sequence Similarity Clusters for the Entities in PDB 1FZI

Entity #1 | Chains: A,B
METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 933
95 % 27 27 1056 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 27 27 1085
70 % 29 29 1082
50 % 29 29 1123
40 % 29 29 1156
30 % 29 29 1212
Entity #2 | Chains: C,D
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 914
95 % 27 27 1038 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 27 27 1064
70 % 27 27 1099
50 % 29 29 1109
40 % 29 29 1141
30 % 29 29 1202
Entity #3 | Chains: E,F
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 25 827
95 % 27 27 1043 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 27 27 1070
70 % 27 27 1105
50 % 29 29 1115
40 % 29 29 1159
30 % 29 29 1206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures